SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_223100476
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: HCI-001
Genomic region: chr3:160395400-160402598
Size: 7198
Super-enhancer rank 476
Number of SE elements: 2
ChIP density(Case|Control): 10010.9784|1010.5992
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SMC4 ;
ROSE Overlap SMC4 ; IFT80 ;
ROSE Proximal IFT80 ; MIR16-2 ; MIR15B ; TRIM59 ;
ROSE Closest SMC4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_223100476 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers