SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_222900097
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: BCM-2665
Genomic region: chr1:161079628-161090474
Size: 10846
Super-enhancer rank 97
Number of SE elements: 2
ChIP density(Case|Control): 24760.3334|2132.3236
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PVRL4 ;
ROSE Overlap PVRL4 ;
ROSE Proximal DEDD ; KLHDC9 ; ARHGAP30 ; USF1 ; NIT1 ; TSTD1 ; PFDN2 ;
ROSE Closest PVRL4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_222900097 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers