SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_200801067
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Ewing sarcoma
Biosample name: A673 ETV6 dTAG cells - 6 hour DMSO treated
Genomic region: chr4:3100586-3125030
Size: 24444
Super-enhancer rank 1067
Number of SE elements: 8
ChIP density(Case|Control): 13319.5356|2312.4024
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HTT-AS ;
ROSE Overlap HTT ;
ROSE Proximal HTT-AS ;
ROSE Closest HTT-AS ;
Lasso ;
PreSTIGE ;
ABC HTT ; HTT-AS ; SH3BP2 ; ADD1 ; MFSD10 ; NOP14-AS1 ; NOP14 ; GRK4 ; MSANTD1 ; LRPAP1 ; ADRA2C ; TMEM128 ; LYAR ; ZBTB49 ; STX18-IT1 ; STX18 ; STX18-AS1 ; LOC101928279 ; MSX1 ; CYTL1 ; ZFYVE28 ; MXD4 ; HAUS3 ; POLN ; C4orf48 ; NELFA ; FGFR3 ; FAM53A ; TNIP2 ; RNF4 ; CFAP99 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_200801067 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers