SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_200800922
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Ewing sarcoma
Biosample name: A673 ETV6 dTAG cells - 6 hour DMSO treated
Genomic region: chr1:39170948-39196985
Size: 26037
Super-enhancer rank 922
Number of SE elements: 7
ChIP density(Case|Control): 14591.1348|2481.3261
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NDUFS5 ;
ROSE Overlap MACF1 ;
ROSE Proximal ;
ROSE Closest MACF1 ;
Lasso ;
PreSTIGE ;
ABC C1orf109 ; CDCA8 ; MANEAL ; C1orf122 ; GNL2 ; DNALI1 ; SNIP1 ; MEAF6 ; ZC3H12A ; LINC01137 ; KIAA0754 ; PABPC4 ; HEYL ; PPIE ; TRIT1 ; MYCL ; MFSD2A ; UTP11 ; SF3A3 ; INPP5B ; MTF1 ; YRDC ; NDUFS5 ; AKIRIN1 ; LOC105378663 ; MYCBP ; POU3F1 ; RRAGC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_200800922 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers