SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_200800028
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Ewing sarcoma
Biosample name: A673 ETV6 dTAG cells - 6 hour DMSO treated
Genomic region: chr1:201253111-201361585
Size: 108474
Super-enhancer rank 28
Number of SE elements: 41
ChIP density(Case|Control): 62697.972|12138.2406
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PKP1 ;
ROSE Overlap TNNT2 ; PKP1 ;
ROSE Proximal TNNT2 ; LAD1 ; PKP1 ;
ROSE Closest PKP1 ;
Lasso ;
PreSTIGE ;
ABC PKP1 ; TMEM9 ; ASCL5 ; KIF21B ; C1orf106 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_200800028 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers