SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200645
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr12:6529958-6541483
Size: 11525
Super-enhancer rank 645
Number of SE elements: 4
ChIP density(Case|Control): 19200.65|1003.8275
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GAPDH ;
ROSE Overlap GAPDH ; NCAPD2 ; IFFO1 ;
ROSE Proximal GAPDH ; SCARNA11 ; MRPL51 ; NOP2 ; SCARNA10 ;
ROSE Closest GAPDH ;
Lasso ;
PreSTIGE ;
ABC TAPBPL ; VAMP1 ; MRPL51 ; NCAPD2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200645 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers