SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200644
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr19:3705754-3730788
Size: 25034
Super-enhancer rank 644
Number of SE elements: 6
ChIP density(Case|Control): 20387.6896|2190.475
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TJP3 ;
ROSE Overlap TJP3 ;
ROSE Proximal MRPL54 ; APBA3 ; PIP5K1C ; RAX2 ;
ROSE Closest TJP3 ;
Lasso ;
PreSTIGE ;
ABC PIP5K1C ; TJP3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200644 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers