SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200633
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr12:12878402-12886424
Size: 8022
Super-enhancer rank 633
Number of SE elements: 1
ChIP density(Case|Control): 19296.921|868.7826
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPL13AP20 ;
ROSE Overlap ;
ROSE Proximal RPL13AP20 ; MIR614 ; GPRC5A ;
ROSE Closest RPL13AP20 ;
Lasso ;
PreSTIGE ;
ABC LOC100506314 ; GPRC5A ; RPL13AP20 ; DDX47 ; APOLD1 ; CDKN1B ; GPR19 ; CREBL2 ; DUSP16 ; BORCS5 ; LOH12CR2 ; LRP6 ; BCL2L14 ; ETV6 ; LOC101928162 ; GRIN2B ; LINC01559 ; FAM234B ; HTR7P1 ; HEBP1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200633 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers