SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200509
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr3:49377804-49419358
Size: 41554
Super-enhancer rank 509
Number of SE elements: 17
ChIP density(Case|Control): 25019.6634|3374.1848
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RHOA ;
ROSE Overlap TCTA ; RHOA ; AMT ;
ROSE Proximal AMT ; GPX1 ; USP4 ; NICN1 ; DAG1 ;
ROSE Closest RHOA ;
Lasso ;
PreSTIGE ;
ABC USP4 ; GPX1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200509 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers