SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200483
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr19:48378248-48425226
Size: 46978
Super-enhancer rank 483
Number of SE elements: 12
ChIP density(Case|Control): 25325.8398|3077.059
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GRIN2D ;
ROSE Overlap KDELR1 ; GRIN2D ;
ROSE Proximal CYTH2 ; SYNGR4 ; GRWD1 ; KCNJ14 ; TMEM143 ;
ROSE Closest GRIN2D ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200483 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers