SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200475
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr4:41124286-41162856
Size: 38570
Super-enhancer rank 475
Number of SE elements: 10
ChIP density(Case|Control): 26547.731|4034.422
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APBB2 ;
ROSE Overlap APBB2 ;
ROSE Proximal ;
ROSE Closest APBB2 ;
Lasso ;
PreSTIGE ;
ABC LIMCH1 ; APBB2 ; TMEM33 ; SLC30A9 ; ATP8A1 ; RHOH ; LOC101060498 ; CHRNA9 ; RBM47 ; PDS5A ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200475 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers