SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_170200449
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr19:1024574-1030429
Size: 5855
Super-enhancer rank 449
Number of SE elements: 1
ChIP density(Case|Control): 23754.906|491.2345
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CNN2 ;
ROSE Overlap CNN2 ;
ROSE Proximal HMHA1 ; ABCA7 ; GRIN3B ; TMEM259 ; WDR18 ;
ROSE Closest CNN2 ;
Lasso ;
PreSTIGE ;
ABC ABCA7 ; CNN2 ; TMEM259 ; GRIN3B ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200449 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers