SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200127
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr19:16064837-16120314
Size: 55477
Super-enhancer rank 127
Number of SE elements: 13
ChIP density(Case|Control): 50423.0453|4648.9726
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TPM4 ;
ROSE Overlap RAB8A ; TPM4 ;
ROSE Proximal LINC00905 ; LINC00661 ; HSH2D ;
ROSE Closest TPM4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200127 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers