SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200047
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr1:156091097-156135397
Size: 44300
Super-enhancer rank 47
Number of SE elements: 7
ChIP density(Case|Control): 81263.92|3260.48
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LMNA ;
ROSE Overlap LMNA ;
ROSE Proximal LAMTOR2 ; RAB25 ; UBQLN4 ; SEMA4A ; LMNA ; MEX3A ;
ROSE Closest LMNA ;
Lasso ;
PreSTIGE ;
ABC SSR2 ; UBQLN4 ; LAMTOR2 ; RAB25 ; GLMP ; KIAA0907 ; MEX3A ; LMNA ; SLC25A44 ; PMF1-BGLAP ; TMEM79 ; PMF1 ; RIT1 ; MSTO2P ; BGLAP ; PAQR6 ; SMG5 ; ARHGEF2 ; RXFP4 ; RHBG ; CCT3 ; TSACC ; SYT11 ; GON4L ; DAP3 ; YY1AP1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200047 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers