SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170200023
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 KI1_ChIP_Fig4
Genomic region: chr2:231601471-231687720
Size: 86249
Super-enhancer rank 23
Number of SE elements: 20
ChIP density(Case|Control): 116694.897|6736.0469
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PTMA ;
ROSE Overlap ;
ROSE Proximal PTMA ; MIR1244-2 ; C2orf57 ;
ROSE Closest C2orf57 ;
Lasso ;
PreSTIGE ;
ABC CAB39 ; ITM2C ; LINC01907 ; SP100 ; SP140L ; SLC16A14 ; DNER ; TRIP12 ; FBXO36 ; SP110 ; C2orf72 ; PSMD1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170200023 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers