SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170100024
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 parental_ChIP_Fig4
Genomic region: chr9:129458668-129507902
Size: 49234
Super-enhancer rank 24
Number of SE elements: 7
ChIP density(Case|Control): 110702.649|3146.0526
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LINC00963 ;
ROSE Overlap LINC00963 ;
ROSE Proximal ;
ROSE Closest LINC00963 ;
Lasso C9orf106 ; IER5L ; PRRX2 ; NTMT1 ; C9orf50 ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170100024 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers