SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_169300929
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Placenta
Biosample name: CT27 EVT_D8, ChIP-seq, rep1
Genomic region: chrX:52954283-52990460
Size: 36177
Super-enhancer rank 929
Number of SE elements: 8
ChIP density(Case|Control): 38112.4695|2818.1883
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: FAM156A ;
ROSE Overlap FAM156A ; FAM156B ;
ROSE Proximal FAM156A ;
ROSE Closest FAM156A ;
Lasso ;
PreSTIGE ;
ABC SMC1A ; RIBC1 ; MAGED1 ; XAGE3 ; TSPYL2 ; KANTR ; KDM5C ; IQSEC2 ; HSD17B10 ; HUWE1 ; PHF8 ; FAM120C ; WNK3 ; MAGED2 ; TSR2 ; FGD1 ; GNL3L ; GSPT2 ; NUDT11 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_169300929 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers