SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_169300082
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Placenta
Biosample name: CT27 EVT_D8, ChIP-seq, rep1
Genomic region: chr3:49443238-49552239
Size: 109001
Super-enhancer rank 82
Number of SE elements: 28
ChIP density(Case|Control): 141254.3959|11314.3038
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DAG1 ;
ROSE Overlap DAG1 ; BSN-AS2 ;
ROSE Proximal DAG1 ; AMT ; BSN ; NICN1 ; TCTA ; RHOA ;
ROSE Closest DAG1 ;
Lasso ;
PreSTIGE ;
ABC TCTA ; RHOA ; AMT ; NICN1 ; USP4 ; DAG1 ; RNF123 ; MST1 ; BSN ; CCDC36 ; C3orf62 ; GPX1 ; KLHDC8B ; BSN-AS2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_169300082 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers