SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_169300063
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Placenta
Biosample name: CT27 EVT_D8, ChIP-seq, rep1
Genomic region: chr1:145286908-145395470
Size: 108562
Super-enhancer rank 63
Number of SE elements: 30
ChIP density(Case|Control): 153484.9556|13961.0732
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNVU1-14 ;
ROSE Overlap NBPF20 ;
ROSE Proximal RNVU1-14 ;
ROSE Closest RNVU1-14 ;
Lasso ;
PreSTIGE ;
ABC LINC01719 ; PIAS3 ; PEX11B ; NBPF10 ; NUDT17 ; RNF115 ; POLR3C ; LIX1L ; RBM8A ; POLR3GL ; TXNIP ; ANKRD34A ; GNRHR2 ; NOTCH2NL ; SEC22B ; LOC100996724 ; PDZK1 ; CD160 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_169300063 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers