SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_166900074
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Placenta
Biosample name: CT27, EVT differentiation for 3 days EVT_d3
Genomic region: chr19:927460-958136
Size: 30676
Super-enhancer rank 74
Number of SE elements: 23
ChIP density(Case|Control): 58713.864|5049.2696
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARID3A ;
ROSE Overlap ARID3A ;
ROSE Proximal MED16 ; GRIN3B ; WDR18 ; R3HDM4 ; KISS1R ;
ROSE Closest ARID3A ;
Lasso ;
PreSTIGE ;
ABC ARID3A ; R3HDM4 ; MED16 ; CFD ; WDR18 ; C19orf25 ; MUM1 ; TMEM259 ; CNN2 ; ABCA7 ; SBNO2 ; STK11 ; ATP5D ; MIDN ; C19orf24 ; CDC34 ; GZMM ; BSG ; POLRMT ; FGF22 ; RNF126 ; FSTL3 ; MISP ; PTBP1 ; KISS1R ; CBARP ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_166900074 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers