SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164900836
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut1h_BR2 Nutlin3a 1h
Genomic region: chr4:2535042-2538456
Size: 3414
Super-enhancer rank 836
Number of SE elements: 1
ChIP density(Case|Control): 29340.2574|240.0042
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNF4 ;
ROSE Overlap ;
ROSE Proximal ;
ROSE Closest RNF4 ;
Lasso ;
PreSTIGE ;
ABC GRK4 ; POLN ; HAUS3 ; MXD4 ; ZFYVE28 ; CFAP99 ; RNF4 ; TNIP2 ; NOP14 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164900836 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers