SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164800575
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut1h_BR1 Nutlin3a 1h
Genomic region: chr3:52669733-52688193
Size: 18460
Super-enhancer rank 575
Number of SE elements: 3
ChIP density(Case|Control): 31308.16|2185.664
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PBRM1 ;
ROSE Overlap PBRM1 ; GNL3 ;
ROSE Proximal SPCS1 ; SNORD19B ; GLT8D1 ; SNORD19 ; SNORD69 ; GNL3 ;
ROSE Closest PBRM1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164800575 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers