SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164700826
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut0h_BR2 DMSO
Genomic region: chr5:898941-915134
Size: 16193
Super-enhancer rank 826
Number of SE elements: 4
ChIP density(Case|Control): 13061.2738|1507.5683
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TRIP13 ;
ROSE Overlap TRIP13 ;
ROSE Proximal BRD9 ; ZDHHC11 ;
ROSE Closest TRIP13 ;
Lasso ;
PreSTIGE ;
ABC SLC12A7 ; NKD2 ; TRIP13 ; BRD9 ; TPPP ; CEP72 ; LOC100996325 ; PP7080 ; HRAT5 ; PDCD6 ; EXOC3-AS1 ; SLC9A3-AS1 ; EXOC3 ; TERT ; CLPTM1L ; LPCAT1 ; SDHAP3 ; LOC728613 ; MRPL36 ; NDUFS6 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164700826 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers