SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164600616
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut0h_BR1 DMSO
Genomic region: chr12:113179600-113195270
Size: 15670
Super-enhancer rank 616
Number of SE elements: 4
ChIP density(Case|Control): 19144.039|1872.565
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RITA1 ;
ROSE Overlap DDX54 ; RITA1 ;
ROSE Proximal CCDC42B ; TPCN1 ; IQCD ; DDX54 ; MIR7106 ; RASAL1 ;
ROSE Closest RITA1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164600616 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers