SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164600534
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut0h_BR1 DMSO
Genomic region: chr3:53224077-53252550
Size: 28473
Super-enhancer rank 534
Number of SE elements: 11
ChIP density(Case|Control): 22200.3981|3206.0598
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TKT ;
ROSE Overlap TKT ;
ROSE Proximal ;
ROSE Closest TKT ;
Lasso ;
PreSTIGE ;
ABC RFT1 ; PRKCD ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164600534 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers