SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164500676
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut10h_BR2 Nutlin3a 10h
Genomic region: chr12:54278564-54288869
Size: 10305
Super-enhancer rank 676
Number of SE elements: 4
ChIP density(Case|Control): 22811.148|1481.859
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HNRNPA1 ;
ROSE Overlap CBX5 ; HNRNPA1 ;
ROSE Proximal COPZ1 ; CBX5 ; NFE2 ; MIR3198-2 ; MIR148B ;
ROSE Closest HNRNPA1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164500676 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers