SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164500639
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut10h_BR2 Nutlin3a 10h
Genomic region: chr16:28821935-28841342
Size: 19407
Super-enhancer rank 639
Number of SE elements: 6
ChIP density(Case|Control): 23839.5588|1667.0613
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ATXN2L ;
ROSE Overlap ATXN2L ;
ROSE Proximal SH2B1 ; ATP2A1-AS1 ; MIR4721 ; ATP2A1 ; TUFM ; ATXN2L ;
ROSE Closest ATXN2L ;
Lasso ;
PreSTIGE ;
ABC ATXN2L ; ATP2A1-AS1 ; NFATC2IP ; SPNS1 ; ATP2A1 ; SH2B1 ; TUFM ; SULT1A1 ; SULT1A2 ; SGF29 ; SBK1 ; RABEP2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164500639 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers