SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164500581
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut10h_BR2 Nutlin3a 10h
Genomic region: chr3:48683333-48717784
Size: 34451
Super-enhancer rank 581
Number of SE elements: 6
ChIP density(Case|Control): 26923.4565|3572.5687
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NCKIPSD ;
ROSE Overlap IP6K2 ; NCKIPSD ;
ROSE Proximal MIR6824 ; CELSR3 ; SLC26A6 ; CELSR3-AS1 ; MIR4793 ; IP6K2 ;
ROSE Closest NCKIPSD ;
Lasso ;
PreSTIGE ;
ABC CELSR3 ; CELSR3-AS1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164500581 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers