SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164500234
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut10h_BR2 Nutlin3a 10h
Genomic region: chr5:883516-915962
Size: 32446
Super-enhancer rank 234
Number of SE elements: 8
ChIP density(Case|Control): 39032.538|2793.6006
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TRIP13 ;
ROSE Overlap TRIP13 ; BRD9 ;
ROSE Proximal ZDHHC11 ;
ROSE Closest TRIP13 ;
Lasso ;
PreSTIGE ;
ABC NKD2 ; SLC12A7 ; TERT ; PP7080 ; LOC728613 ; CLPTM1L ; SLC9A3-AS1 ; TPPP ; CEP72 ; LOC100996325 ; BRD9 ; TRIP13 ; HRAT5 ; PDCD6 ; EXOC3-AS1 ; EXOC3 ; LPCAT1 ; SDHAP3 ; MRPL36 ; NDUFS6 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164500234 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers