SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164400246
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut10h_BR1 Nutlin3a 10h
Genomic region: chr1:1543765-1576053
Size: 32288
Super-enhancer rank 246
Number of SE elements: 6
ChIP density(Case|Control): 36995.5904|2479.7184
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SSU72 ;
ROSE Overlap SSU72 ;
ROSE Proximal C1orf233 ; MIB2 ; ATAD3A ; TMEM240 ;
ROSE Closest SSU72 ;
Lasso ;
PreSTIGE ;
ABC MIB2 ; VWA1 ; LINC01770 ; TMEM88B ; MXRA8 ; CCNL2 ; LOC148413 ; ANKRD65 ; MRPL20 ; ATAD3B ; ATAD3A ; SSU72 ; FNDC10 ; LOC100129534 ; GABRD ; CALML6 ; GNB1 ; NADK ; CDK11A ; CDK11B ; SLC35E2B ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164400246 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers