SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164200116
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut1h_BR1 Nutlin3a 1h
Genomic region: chr12:6960424-6972331
Size: 11907
Super-enhancer rank 116
Number of SE elements: 1
ChIP density(Case|Control): 60794.7606|2037.2877
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SCARNA12 ;
ROSE Overlap MIR200C ; PTPN6 ; PHB2 ; EMG1 ; SCARNA12 ; MIR141 ;
ROSE Proximal ENO2 ; RNU7-1 ; C12orf57 ; ATN1 ; LPCAT3 ;
ROSE Closest SCARNA12 ;
Lasso ;
PreSTIGE ;
ABC TPI1 ; USP5 ; CDCA3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164200116 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers