SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164101033
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr3:9783796-9797831
Size: 14035
Super-enhancer rank 1033
Number of SE elements: 4
ChIP density(Case|Control): 15640.604|1397.886
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARPC4 ;
ROSE Overlap ARPC4 ; ARPC4-TTLL3 ; TADA3 ;
ROSE Proximal CAMK1 ; RPUSD3 ; TADA3 ; OGG1 ; TTLL3 ;
ROSE Closest ARPC4 ;
Lasso ;
PreSTIGE ;
ABC OGG1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164101033 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers