SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164101030
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr4:39954158-39978505
Size: 24347
Super-enhancer rank 1030
Number of SE elements: 7
ChIP density(Case|Control): 16670.3909|2398.1795
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PDS5A ;
ROSE Overlap PDS5A ;
ROSE Proximal ;
ROSE Closest PDS5A ;
Lasso ;
PreSTIGE ;
ABC PDS5A ; UBE2K ; N4BP2 ; LOC344967 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164101030 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers