SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100958
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr19:39388146-39392570
Size: 4424
Super-enhancer rank 958
Number of SE elements: 1
ChIP density(Case|Control): 15620.7016|569.8112
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PAF1 ;
ROSE Overlap PAF1 ; MED29 ;
ROSE Proximal MIR4530 ; PLEKHG2 ; RPS16 ; SAMD4B ; PAF1 ; ZFP36 ;
ROSE Closest PAF1 ;
Lasso ;
PreSTIGE ;
ABC NFKBIB ; SIRT2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100958 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers