SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164100843
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr9:6680309-6687473
Size: 7164
Super-enhancer rank 843
Number of SE elements: 3
ChIP density(Case|Control): 16914.9204|757.2348
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KDM4C ;
ROSE Overlap ;
ROSE Proximal GLDC ; KDM4C ;
ROSE Closest KDM4C ;
Lasso ;
PreSTIGE ;
ABC JAK2 ; RCL1 ; KDM4C ; GLDC ; UHRF2 ; RANBP6 ; KIAA2026 ; ERMP1 ; RIC1 ; PDCD1LG2 ; CD274 ; PLGRKT ; TMEM261 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100843 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers