SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100725
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr19:1014683-1022618
Size: 7935
Super-enhancer rank 725
Number of SE elements: 1
ChIP density(Case|Control): 18343.3395|754.6185
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM259 ;
ROSE Overlap TMEM259 ; RNU6-1 ; RNU6-9 ;
ROSE Proximal CNN2 ; HMHA1 ; ABCA7 ; GRIN3B ; TMEM259 ; WDR18 ;
ROSE Closest TMEM259 ;
Lasso ;
PreSTIGE ;
ABC CNN2 ; TMEM259 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100725 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers