SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164100518
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr16:1961896-1967041
Size: 5145
Super-enhancer rank 518
Number of SE elements: 1
ChIP density(Case|Control): 21756.6615|469.7385
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS2 ;
ROSE Overlap SNHG9 ; RPS2 ; RNF151 ; NDUFB10 ; SNORA78 ; SNORA64 ; SNORA10 ;
ROSE Proximal HS3ST6 ; GFER ; RPL3L ; SYNGR3 ; MSRB1 ; TBL3 ; NOXO1 ; ZNF598 ;
ROSE Closest RPS2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100518 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers