SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100476
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr11:118753949-118793366
Size: 39417
Super-enhancer rank 476
Number of SE elements: 8
ChIP density(Case|Control): 26346.3228|4119.0765
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DDX6 ;
ROSE Overlap DDX6 ;
ROSE Proximal ;
ROSE Closest DDX6 ;
Lasso ;
PreSTIGE ;
ABC CXCR5 ; UPK2 ; BCL9L ; MPZL2 ; MPZL3 ; SCN2B ; SCN4B ; TMPRSS4 ; IL10RA ; SIK3 ; PAFAH1B2 ; RNF214 ; PCSK7 ; BACE1 ; CEP164 ; FXYD6-FXYD2 ; FXYD6 ; TMPRSS13 ; LOC100652768 ; TAGLN ; SIDT2 ; THY1 ; USP2-AS1 ; USP2 ; RNF26 ; MCAM ; CBL ; CCDC153 ; NLRX1 ; ABCG4 ; HINFP ; C2CD2L ; DPAGT1 ; H2AFX ; HMBS ; VPS11 ; HYOU1 ; SLC37A4 ; TRAPPC4 ; RPS25 ; OAF ; LOC102724301 ; NECTIN1 ; LOC101929089 ; TTC36 ; KMT2A ; ATP5L ; UBE4A ; TMEM25 ; IFT46 ; ARCN1 ; PHLDB1 ; TREH ; DDX6 ; CCDC84 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100476 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers