SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100458
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr3:23944790-23964467
Size: 19677
Super-enhancer rank 458
Number of SE elements: 3
ChIP density(Case|Control): 24769.4076|2170.3731
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NR1D2 ;
ROSE Overlap NR1D2 ;
ROSE Proximal RPL15 ; NKIRAS1 ; NR1D2 ;
ROSE Closest NR1D2 ;
Lasso ;
PreSTIGE ;
ABC NKIRAS1 ; RPL15 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100458 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers