SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100257
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr12:56111973-56120657
Size: 8684
Super-enhancer rank 257
Number of SE elements: 1
ChIP density(Case|Control): 29889.4596|1031.6592
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPL41 ;
ROSE Overlap ZC3H10 ; PA2G4 ; RPL41 ;
ROSE Proximal ERBB3 ; MYL6B ; MYL6 ; ESYT1 ;
ROSE Closest RPL41 ;
Lasso ;
PreSTIGE ;
ABC RDH5 ; BLOC1S1 ; CD63 ; BLOC1S1-RDH5 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100257 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers