SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100232
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr12:6496173-6541216
Size: 45043
Super-enhancer rank 232
Number of SE elements: 16
ChIP density(Case|Control): 34304.7488|4526.8215
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SCARNA10 ;
ROSE Overlap SCARNA10 ; GAPDH ; NCAPD2 ; IFFO1 ;
ROSE Proximal VAMP1 ; GAPDH ; SCARNA11 ; MRPL51 ; TAPBPL ; NOP2 ; CD27-AS1 ;
ROSE Closest SCARNA10 ;
Lasso ;
PreSTIGE ;
ABC TAPBPL ; VAMP1 ; MRPL51 ; NCAPD2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100232 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers