SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164100209
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr3:50236139-50266438
Size: 30299
Super-enhancer rank 209
Number of SE elements: 10
ChIP density(Case|Control): 33843.983|2187.5878
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GNAI2 ;
ROSE Overlap GNAI2 ;
ROSE Proximal HYAL1 ; SEMA3B ; IFRD2 ; MIR6872 ; MIR5787 ; GNAT1 ; HYAL3 ; NAT6 ; SLC38A3 ; SEMA3B-AS1 ; LSMEM2 ;
ROSE Closest GNAI2 ;
Lasso ;
PreSTIGE ;
ABC SLC38A3 ; SEMA3F ; SEMA3F-AS1 ; GNAI2 ; SEMA3B-AS1 ; SEMA3B ; LSMEM2 ; IFRD2 ; NAT6 ; TUSC2 ; HYAL2 ; HYAL1 ; HYAL3 ; RASSF1-AS1 ; RBM5 ; RBM5-AS1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100209 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers