SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164100003
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR2 DMSO
Genomic region: chr1:8002478-8139017
Size: 136539
Super-enhancer rank 3
Number of SE elements: 28
ChIP density(Case|Control): 132565.7151|16043.3325
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ERRFI1 ;
ROSE Overlap ERRFI1 ;
ROSE Proximal PARK7 ;
ROSE Closest ERRFI1 ;
Lasso ;
PreSTIGE ;
ABC PARK7 ; ERRFI1 ; SLC45A1 ; LINC01714 ; VAMP3 ; PER3 ; H6PD ; GPR157 ; RERE ; LOC102724552 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164100003 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers