SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000927
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr19:44888717-44901122
Size: 12405
Super-enhancer rank 927
Number of SE elements: 6
ChIP density(Case|Control): 12635.733|889.4385
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TOMM40 ;
ROSE Overlap PVRL2 ; TOMM40 ;
ROSE Proximal APOE ; APOC1P1 ; TOMM40 ; APOC1 ; PVRL2 ; APOC4-APOC2 ; APOC2 ;
ROSE Closest TOMM40 ;
Lasso APOC1 ; APOC2 ; BCL3 ; BCAM ; APOE ; PVRL2 ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000927 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers