SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000890
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr6:4008262-4024296
Size: 16034
Super-enhancer rank 890
Number of SE elements: 3
ChIP density(Case|Control): 13768.3958|1738.0856
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PRPF4B ;
ROSE Overlap PRPF4B ;
ROSE Proximal ;
ROSE Closest PRPF4B ;
Lasso FAM217A ;
PreSTIGE ;
ABC PRPF4B ; SLC22A23 ; PXDC1 ; FAM50B ; LOC100507506 ; ECI2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000890 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers