SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000878
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr19:49450403-49455130
Size: 4727
Super-enhancer rank 878
Number of SE elements: 1
ChIP density(Case|Control): 12628.6532|511.9341
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ALDH16A1 ;
ROSE Overlap PIH1D1 ; ALDH16A1 ;
ROSE Proximal FLT3LG ; RPL13A ; MIR150 ; SNORD35A ; SNORD35B ; PTH2 ; SNORD33 ; SNORD34 ; ALDH16A1 ; RPS11 ; SNORD32A ; GFY ; SLC17A7 ;
ROSE Closest ALDH16A1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000878 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers