SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164000735
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr12:120290584-120293955
Size: 3371
Super-enhancer rank 735
Number of SE elements: 1
ChIP density(Case|Control): 13787.7271|374.5181
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNU4-2 ;
ROSE Overlap RNU4-2 ; RNU4-1 ;
ROSE Proximal SIRT4 ; PXN ; PLA2G1B ;
ROSE Closest RNU4-2 ;
Lasso SIRT4 ; PLA2G1B ; MSI1 ; PXN ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000735 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers