SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000679
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr19:46599990-46606413
Size: 6423
Super-enhancer rank 679
Number of SE elements: 3
ChIP density(Case|Control): 14519.1915|487.5057
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CALM3 ;
ROSE Overlap PPP5D1 ; CALM3 ;
ROSE Proximal PTGIR ; GNG8 ; DACT3 ;
ROSE Closest CALM3 ;
Lasso PTGIR ; PNMAL2 ; AC011484.1 ; CALM3 ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000679 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers