SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000624
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr21:8219330-8225865
Size: 6535
Super-enhancer rank 624
Number of SE elements: 5
ChIP density(Case|Control): 30706.658|16006.829
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNA28S5 ;
ROSE Overlap RNA28S5 ; LOC100507412 ;
ROSE Proximal MIR6724-1 ; MIR3687-1 ; MIR3648-1 ; RNA5-8S5 ; RNA18S5 ;
ROSE Closest RNA28S5 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000624 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers