SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000571
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr16:1961989-1966958
Size: 4969
Super-enhancer rank 571
Number of SE elements: 1
ChIP density(Case|Control): 15938.5644|456.6511
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS2 ;
ROSE Overlap SNHG9 ; RPS2 ; RNF151 ; SNORA78 ; SNORA64 ; SNORA10 ;
ROSE Proximal HS3ST6 ; GFER ; RPL3L ; SYNGR3 ; NDUFB10 ; MSRB1 ; TBL3 ; NOXO1 ; ZNF598 ;
ROSE Closest RPS2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000571 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers